Notice
The Integrated Genomic Surveillance System Düsseldorf (IGSD) for the detection of SARS-CoV-2 transmission chains in the city of Düsseldorf is currently offline.
This website is kept online mainly for archival purposes.
Over the course of 2021, the IGSD enabled the monitoring of SARS-CoV-2 in Düsseldorf and demonstrated that transmission chain tracking in the population at large can be achieved.
These results are described in
Walker et al. Clinical Infectious Diseases (2021)
and Houwaart et al. Eurosurveillance (2022).
Live Feed
SARS-CoV-2 surveillance sequencing in Duesseldorf [last 28 days]
Distances last updated:
??
Sequences last updated:
??
Distances last updated:
??
Sequences last updated:
??
| Recent total* | 28.01 | 27.01 | 26.01 | 25.01 | 24.01 | 23.01 | 21.01 | 20.01 | 19.01 | 18.01 | 17.01 | 16.01 | 14.01 | 13.01 | 12.01 | 11.01 | 10.01 | 09.01 | 07.01 | 06.01 | 05.01 | Total in Database | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total Samples | 99 | 2 | 6 | 1 | 4 | 3 | 2 | 2 | 11 | 4 | 3 | 5 | 6 | 1 | 4 | 12 | 9 | 7 | 7 | 2 | 2 | 6 | 28007 |
| With Lineage Information | 83 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 11 | 4 | 3 | 5 | 6 | 1 | 4 | 12 | 9 | 7 | 7 | 2 | 2 | 6 | 28007 |
| B.1.1.7 (Alpha) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4001 |
| B.1.351 (Beta) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 40 |
| P.1 (Gamma) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 |
| Delta | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7765 |
| B.1.617.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1108 |
| AY.* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6657 |
| Omicron | 45 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 | 3 | 3 | 3 | 4 | 1 | 2 | 5 | 5 | 3 | 3 | 2 | 1 | 5 | 12303 |
| B.1.1.529 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 31 |
| BA.1* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3513 |
| BA.2* | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6551 |
| BA.2.75* | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| BA.3* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 |
| BA.4* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 212 |
| BA.5* | 12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 2 | 2 | 2 | 0 | 0 | 0 | 2 | 1591 |
| BQ.1.1* | 23 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 1 | 1 | 0 | 3 | 0 | 1 | 3 | 2 | 0 | 3 | 2 | 0 | 3 | 139 |
| BF.7* | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 258 |
*Sampling dates and sequencing speed: Listed dates specify sampling dates (i.e. day of the positive diagnostic test). The time delay between sampling and availability of the sequencing data for individual samples exhibits more pronounced flucutations during periods of very low or very high incidences and is influenced by a number of additional factors, such as sample and sequencing logistics
View
Coloring
Increased values for clonality during moderate to high-incidence periods may indicate superspreading;
during low-incidence periods, the indicator is less informative
| ID | Sampling Date | Ns | Pangolin | Status Runs | Processing Status | Sequence Last Update | Record Last Update |
|---|---|---|---|---|---|---|---|
| V6328 | 2023-01-28 | None | None | None | None | None | None |
| V6329 | 2023-01-28 | None | None | None | None | None | None |
| V6322 | 2023-01-27 | None | None | None | None | None | None |
| V6323 | 2023-01-27 | None | None | None | None | None | None |
| V6324 | 2023-01-27 | None | None | None | None | None | None |
| V6325 | 2023-01-27 | None | None | None | None | None | None |
| V6326 | 2023-01-27 | None | None | None | None | None | None |
| V6327 | 2023-01-27 | None | None | None | None | None | None |
| V6321 | 2023-01-26 | None | None | None | None | None | None |
| V6317 | 2023-01-25 | None | None | None | None | None | None |
| V6318 | 2023-01-25 | None | None | None | None | None | None |
| V6319 | 2023-01-25 | None | None | None | None | None | None |
| V6320 | 2023-01-25 | None | None | None | None | None | None |
| V6330 | 2023-01-24 | None | None | None | None | None | None |
| V6331 | 2023-01-24 | None | None | None | None | None | None |
| V6332 | 2023-01-24 | None | None | None | None | None | None |
| V6315 | 2023-01-23 | 1822 | BQ.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6316 | 2023-01-23 | 2331 | BQ.1.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6313 | 2023-01-21 | 3867 | BM.4.1.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6314 | 2023-01-21 | 2980 | BN.1 | Finished | Processing | 2023-01-28 00:44:40 | 2023-01-30 15:26:34 |
| N3457 | 2023-01-20 | 842 | XBB.1 | Finished | Finished | 2023-01-31 13:01:41 | 2023-01-31 13:01:41 |
| N3458 | 2023-01-20 | 302 | XBB.1 | Finished | Finished | 2023-01-31 13:01:41 | 2023-01-31 13:01:41 |
| N3431 | 2023-01-20 | 77 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| N3443 | 2023-01-20 | 96 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| N3466 | 2023-01-20 | 291 | XBB.1 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| N3558 | 2023-01-20 | 85 | BF.7 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| N3464 | 2023-01-20 | 310 | XBB.1 | Finished | Finished | 2023-01-31 13:01:39 | 2023-01-31 13:01:39 |
| N3537 | 2023-01-20 | 105 | BQ.1 | Finished | Finished | 2023-01-31 13:01:38 | 2023-01-31 13:01:38 |
| N3540 | 2023-01-20 | 96 | BF.11 | Finished | Finished | 2023-01-31 13:01:38 | 2023-01-31 13:01:38 |
| N3541 | 2023-01-20 | 311 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:38 | 2023-01-31 13:01:38 |
| V6312 | 2023-01-20 | 29371 | Unassigned | Finished | Processing | 2023-01-28 00:44:40 | 2023-01-30 15:26:34 |
| N3439 | 2023-01-19 | 87 | BF.7 | Finished | Finished | 2023-01-31 13:01:39 | 2023-01-31 13:01:39 |
| N3560 | 2023-01-19 | 94 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:37 | 2023-01-31 13:01:37 |
| V6310 | 2023-01-19 | 6858 | BA.5.2.6 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6311 | 2023-01-19 | 29902 | Unassigned | Finished | Processing | 2023-01-27 17:44:43 | 2023-01-30 15:26:34 |
| V6307 | 2023-01-18 | 4689 | XBB.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6308 | 2023-01-18 | 2847 | BA.2.75.5 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6309 | 2023-01-18 | 3051 | BQ.1.1 | Finished | Processing | 2023-01-28 00:44:40 | 2023-01-30 15:26:34 |
| V6302 | 2023-01-17 | 2024 | BM.4.1.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6305 | 2023-01-17 | 1153 | BF.7 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6303 | 2023-01-17 | 2672 | BA.5.1 | Finished | Processing | 2023-01-28 00:44:40 | 2023-01-30 15:26:34 |
| V6304 | 2023-01-17 | 2244 | BQ.1 | Finished | Processing | 2023-01-28 00:44:40 | 2023-01-30 15:26:34 |
| V6306 | 2023-01-17 | 2332 | BA.2.3.20 | Finished | Processing | 2023-01-27 20:31:07 | 2023-01-30 15:26:34 |
| V6296 | 2023-01-16 | 4378 | BA.5.2 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6299 | 2023-01-16 | 7998 | BF.11 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6300 | 2023-01-16 | 2304 | BQ.1.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6301 | 2023-01-16 | 23907 | Unassigned | Finished | Processing | 2023-01-28 00:44:40 | 2023-01-30 15:26:34 |
| V6297 | 2023-01-16 | 2331 | BQ.1.1 | Finished | Processing | 2023-01-27 23:22:08 | 2023-01-30 15:26:34 |
| V6298 | 2023-01-16 | 1153 | BQ.1.1 | Finished | Processing | 2023-01-27 23:22:08 | 2023-01-30 15:26:34 |
| V6295 | 2023-01-14 | 2984 | BF.7 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6291 | 2023-01-13 | 1514 | BQ.1.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6292 | 2023-01-13 | 1769 | BA.5.2.24 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6293 | 2023-01-13 | 2140 | BQ.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6294 | 2023-01-13 | 29902 | Unassigned | Finished | Processing | 2023-01-27 19:19:19 | 2023-01-30 15:26:34 |
| N3463 | 2023-01-12 | 540 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:42 | 2023-01-31 13:01:42 |
| N3535 | 2023-01-12 | 351 | BM.4.1.1 | Finished | Finished | 2023-01-31 13:01:41 | 2023-01-31 13:01:41 |
| N3449 | 2023-01-12 | 661 | BM.4.1.1 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| N3454 | 2023-01-12 | 80 | XBB.1 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| N3453 | 2023-01-12 | 546 | BA.5.1.26 | Finished | Finished | 2023-01-31 13:01:39 | 2023-01-31 13:01:39 |
| N3536 | 2023-01-12 | 88 | BQ.1 | Finished | Finished | 2023-01-31 13:01:39 | 2023-01-31 13:01:39 |
| N3452 | 2023-01-12 | 329 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:38 | 2023-01-31 13:01:38 |
| N3455 | 2023-01-12 | 552 | BA.5.1.26 | Finished | Finished | 2023-01-31 13:01:38 | 2023-01-31 13:01:38 |
| N3460 | 2023-01-12 | 98 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:38 | 2023-01-31 13:01:38 |
| N3534 | 2023-01-12 | 245 | BQ.1 | Finished | Finished | 2023-01-31 13:01:38 | 2023-01-31 13:01:38 |
| N3548 | 2023-01-12 | 145 | XBB.1 | Finished | Finished | 2023-01-31 13:01:38 | 2023-01-31 13:01:38 |
| V6290 | 2023-01-12 | 2296 | BQ.1 | Finished | Processing | 2023-01-27 21:57:44 | 2023-01-30 15:26:34 |
| N3456 | 2023-01-11 | 631 | BF.7 | Finished | Finished | 2023-01-31 13:01:42 | 2023-01-31 13:01:42 |
| N3436 | 2023-01-11 | 206 | BF.11 | Finished | Finished | 2023-01-31 13:01:41 | 2023-01-31 13:01:41 |
| N3532 | 2023-01-11 | 303 | BA.5.2.24 | Finished | Finished | 2023-01-31 13:01:41 | 2023-01-31 13:01:41 |
| N3533 | 2023-01-11 | 250 | BA.5.2.24 | Finished | Finished | 2023-01-31 13:01:39 | 2023-01-31 13:01:39 |
| N3561 | 2023-01-11 | 295 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:39 | 2023-01-31 13:01:39 |
| V6287 | 2023-01-11 | 2564 | BQ.1 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6289 | 2023-01-11 | 23253 | Unassigned | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6286 | 2023-01-11 | 2023 | BQ.1.1 | Finished | Processing | 2023-01-28 00:44:40 | 2023-01-30 15:26:34 |
| V6288 | 2023-01-11 | 1357 | XBB.1 | Finished | Processing | 2023-01-27 23:22:08 | 2023-01-30 15:26:34 |
| N3444 | 2023-01-10 | 90 | BA.5.2.1 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| V6282 | 2023-01-10 | 2610 | BF.7 | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6283 | 2023-01-10 | 20817 | Unassigned | Finished | Processing | 2023-01-28 02:40:16 | 2023-01-30 15:26:34 |
| V6281 | 2023-01-10 | 2110 | BA.5.2.1 | Finished | Processing | 2023-01-27 23:22:08 | 2023-01-30 15:26:34 |
| V6280 | 2023-01-10 | 29902 | Unassigned | Finished | Processing | 2023-01-27 20:31:07 | 2023-01-30 15:26:34 |
| V6284 | 2023-01-10 | 2451 | BN.1 | Finished | Processing | 2023-01-27 20:31:07 | 2023-01-30 15:26:34 |
| V6285 | 2023-01-10 | 29902 | Unassigned | Finished | Processing | 2023-01-27 17:44:43 | 2023-01-30 15:26:34 |
| V6265 | 2023-01-09 | 1153 | BQ.1.1 | Finished | Finished | 2023-01-20 16:24:42 | 2023-01-26 14:24:13 |
| V6266 | 2023-01-09 | 838 | BQ.1.1 | Finished | Finished | 2023-01-20 16:24:42 | 2023-01-26 14:24:13 |
| V6271 | 2023-01-09 | 1153 | XBB.1 | Finished | Finished | 2023-01-20 16:24:42 | 2023-01-26 14:24:13 |
| V6270 | 2023-01-09 | 1126 | XBB.1 | Finished | Finished | 2023-01-20 11:16:27 | 2023-01-26 14:24:13 |
| V6267 | 2023-01-09 | 1126 | BN.1 | Finished | Finished | 2023-01-20 05:45:28 | 2023-01-26 14:24:13 |
| V6268 | 2023-01-09 | 9709 | Unassigned | Finished | Finished | 2023-01-20 05:45:28 | 2023-01-26 14:24:13 |
| V6269 | 2023-01-09 | 1126 | BQ.1.1 | Finished | Finished | 2023-01-20 00:44:38 | 2023-01-26 14:24:13 |
| V6263 | 2023-01-07 | 1126 | BQ.1.1 | Finished | Finished | 2023-01-20 11:16:27 | 2023-01-26 14:24:13 |
| V6264 | 2023-01-07 | 1126 | BQ.1.1 | Finished | Finished | 2023-01-19 02:11:31 | 2023-01-26 14:24:13 |
| N3495 | 2023-01-06 | 270 | BQ.1 | Finished | Finished | 2023-01-31 13:01:39 | 2023-01-31 13:01:39 |
| V6262 | 2023-01-06 | 1382 | BF.7 | Finished | Finished | 2023-01-20 11:16:27 | 2023-01-26 14:24:13 |
| N3468 | 2023-01-05 | 90 | BA.5.2 | Finished | Finished | 2023-01-31 13:01:41 | 2023-01-31 13:01:41 |
| N3504 | 2023-01-05 | 88 | BQ.1 | Finished | Finished | 2023-01-31 13:01:41 | 2023-01-31 13:01:41 |
| N3450 | 2023-01-05 | 97 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| N3451 | 2023-01-05 | 102 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:40 | 2023-01-31 13:01:40 |
| N3474 | 2023-01-05 | 86 | BQ.1.1 | Finished | Finished | 2023-01-31 13:01:39 | 2023-01-31 13:01:39 |
| V6261 | 2023-01-05 | 838 | BA.5.1 | Finished | Processing | 2023-01-20 11:16:27 | 2023-01-20 13:44:18 |