Notice
The Integrated Genomic Surveillance System Düsseldorf (IGSD) for the detection of SARS-CoV-2 transmission chains in the city of Düsseldorf is currently offline.
This website is kept online mainly for archival purposes.
Over the course of 2021, the IGSD enabled the monitoring of SARS-CoV-2 in Düsseldorf and demonstrated that transmission chain tracking in the population at large can be achieved.
These results are described in
Walker et al. Clinical Infectious Diseases (2021)
and Houwaart et al. Eurosurveillance (2022).
Live Feed
SARS-CoV-2 surveillance sequencing in Duesseldorf [last 28 days]
Distances last updated:
??
Sequences last updated:
??
Distances last updated:
??
Sequences last updated:
??
| Recent total* | 27.03 | 25.03 | 24.03 | 23.03 | 22.03 | 21.03 | 20.03 | 17.03 | 14.03 | 13.03 | 11.03 | 10.03 | 09.03 | 08.03 | 07.03 | 06.03 | 04.03 | Total in Database | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total Samples | 96 | 6 | 1 | 3 | 6 | 1 | 1 | 2 | 1 | 9 | 23 | 3 | 6 | 6 | 9 | 9 | 7 | 3 | 28356 |
| With Lineage Information | 85 | 6 | 1 | 3 | 6 | 1 | 1 | 1 | 1 | 7 | 23 | 2 | 5 | 5 | 6 | 9 | 5 | 3 | 28356 |
| B.1.1.7 (Alpha) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4001 |
| B.1.351 (Beta) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 40 |
| P.1 (Gamma) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 |
| Delta | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7765 |
| B.1.617.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1108 |
| AY.* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6657 |
| Omicron | 13 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 3 | 0 | 1 | 1 | 1 | 3 | 1 | 0 | 12448 |
| B.1.1.529 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 31 |
| BA.1* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3561 |
| BA.2* | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6559 |
| BA.2.75* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 |
| BA.3* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 |
| BA.4* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 212 |
| BA.5* | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1607 |
| BQ.1.1* | 11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 1 | 1 | 1 | 3 | 1 | 0 | 203 |
| BF.7* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 265 |
*Sampling dates and sequencing speed: Listed dates specify sampling dates (i.e. day of the positive diagnostic test). The time delay between sampling and availability of the sequencing data for individual samples exhibits more pronounced flucutations during periods of very low or very high incidences and is influenced by a number of additional factors, such as sample and sequencing logistics
View
Coloring
Increased values for clonality during moderate to high-incidence periods may indicate superspreading;
during low-incidence periods, the indicator is less informative
| ID | Sampling Date | Ns | Pangolin | Status Runs | Processing Status | Sequence Last Update | Record Last Update |
|---|---|---|---|---|---|---|---|
| V6576 | 2023-03-27 | 599 | BA.2 | Finished | Processing | 2023-04-01 01:22:39 | 2023-04-01 18:32:07 |
| V6572 | 2023-03-27 | 574 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6573 | 2023-03-27 | 574 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6574 | 2023-03-27 | 1685 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6575 | 2023-03-27 | 22664 | Unassigned | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6577 | 2023-03-27 | 579 | BQ.1.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6571 | 2023-03-25 | 398 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6569 | 2023-03-24 | 547 | BM.4.1.1 | Finished | Processing | 2023-04-01 01:22:39 | 2023-04-01 18:32:07 |
| V6568 | 2023-03-24 | 853 | XBB | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6570 | 2023-03-24 | 1178 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6562 | 2023-03-23 | 21243 | Unassigned | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6563 | 2023-03-23 | 177 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6564 | 2023-03-23 | 574 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6565 | 2023-03-23 | 1366 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6566 | 2023-03-23 | 177 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6567 | 2023-03-23 | 791 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6561 | 2023-03-22 | 828 | BA.5.2.1 | Running | Processing | 2023-03-31 14:44:41 | 2023-04-01 01:17:50 |
| V6560 | 2023-03-21 | 1288 | XBB | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6558 | 2023-03-20 | 29902 | Unassigned | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
| V6559 | 2023-03-20 | None | None | None | None | None | None |
| V6557 | 2023-03-17 | 11615 | Unassigned | Finished | Processing | 2023-04-01 01:22:39 | 2023-04-01 18:32:07 |
| V6548 | 2023-03-14 | 847 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6550 | 2023-03-14 | 1912 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6551 | 2023-03-14 | 1579 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6552 | 2023-03-14 | 7586 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6555 | 2023-03-14 | 1156 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6556 | 2023-03-14 | 847 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6553 | 2023-03-14 | 574 | BM.4.1.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6549 | 2023-03-14 | None | None | None | None | None | None |
| V6554 | 2023-03-14 | None | None | None | None | None | None |
| V6525 | 2023-03-13 | 574 | BM.4.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6532 | 2023-03-13 | 847 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6534 | 2023-03-13 | 935 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6535 | 2023-03-13 | 15066 | Unassigned | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6536 | 2023-03-13 | 1794 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6538 | 2023-03-13 | 2180 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6539 | 2023-03-13 | 1243 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6540 | 2023-03-13 | 1588 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6541 | 2023-03-13 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6543 | 2023-03-13 | 1078 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6544 | 2023-03-13 | 2066 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6545 | 2023-03-13 | 1461 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6546 | 2023-03-13 | 1178 | BQ.1.2 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6547 | 2023-03-13 | 839 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6526 | 2023-03-13 | 868 | BQ.1.2 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6527 | 2023-03-13 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6528 | 2023-03-13 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6529 | 2023-03-13 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6530 | 2023-03-13 | 576 | BQ.1.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6531 | 2023-03-13 | 847 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6533 | 2023-03-13 | 29902 | Unassigned | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6537 | 2023-03-13 | 847 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6542 | 2023-03-13 | 1616 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6522 | 2023-03-11 | 1496 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6524 | 2023-03-11 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6523 | 2023-03-11 | None | None | None | None | None | None |
| V6516 | 2023-03-10 | 20744 | Unassigned | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6517 | 2023-03-10 | 2277 | XBB | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6519 | 2023-03-10 | 26043 | Unassigned | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6521 | 2023-03-10 | 1363 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6520 | 2023-03-10 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6518 | 2023-03-10 | None | None | None | None | None | None |
| V6510 | 2023-03-09 | 896 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6512 | 2023-03-09 | 574 | BQ.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6514 | 2023-03-09 | 2263 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6515 | 2023-03-09 | 882 | BM.4.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6513 | 2023-03-09 | 28877 | Unassigned | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6511 | 2023-03-09 | None | None | None | None | None | None |
| V6509 | 2023-03-08 | 1482 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
| V6501 | 2023-03-08 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6503 | 2023-03-08 | 575 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6506 | 2023-03-08 | 1351 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6508 | 2023-03-08 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6507 | 2023-03-08 | 29902 | Unassigned | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
| V6502 | 2023-03-08 | None | None | None | None | None | None |
| V6504 | 2023-03-08 | None | None | None | None | None | None |
| V6505 | 2023-03-08 | None | None | None | None | None | None |
| V6492 | 2023-03-07 | 177 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6493 | 2023-03-07 | 177 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6494 | 2023-03-07 | 21420 | Unassigned | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6495 | 2023-03-07 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6496 | 2023-03-07 | 29370 | Unassigned | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6497 | 2023-03-07 | 855 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6498 | 2023-03-07 | 574 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6499 | 2023-03-07 | 25357 | Unassigned | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6500 | 2023-03-07 | 1113 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6485 | 2023-03-06 | 574 | BM.4.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6486 | 2023-03-06 | 1161 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6487 | 2023-03-06 | 1078 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6488 | 2023-03-06 | 1582 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6489 | 2023-03-06 | 882 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6490 | 2023-03-06 | None | None | None | None | None | None |
| V6491 | 2023-03-06 | None | None | None | None | None | None |
| V6482 | 2023-03-04 | 883 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6483 | 2023-03-04 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
| V6484 | 2023-03-04 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |