Notice
The Integrated Genomic Surveillance System Düsseldorf (IGSD) for the detection of SARS-CoV-2 transmission chains in the city of Düsseldorf is currently offline.
This website is kept online mainly for archival purposes.
Over the course of 2021, the IGSD enabled the monitoring of SARS-CoV-2 in Düsseldorf and demonstrated that transmission chain tracking in the population at large can be achieved.
These results are described in
Walker et al. Clinical Infectious Diseases (2021)
and Houwaart et al. Eurosurveillance (2022).
Live Feed
Distances last updated:
??
Sequences last updated:
??
Recent total* | 27.03 | 25.03 | 24.03 | 23.03 | 22.03 | 21.03 | 20.03 | 17.03 | 14.03 | 13.03 | 11.03 | 10.03 | 09.03 | 08.03 | 07.03 | 06.03 | 04.03 | Total in Database | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Total Samples | 96 | 6 | 1 | 3 | 6 | 1 | 1 | 2 | 1 | 9 | 23 | 3 | 6 | 6 | 9 | 9 | 7 | 3 | 28356 |
With Lineage Information | 85 | 6 | 1 | 3 | 6 | 1 | 1 | 1 | 1 | 7 | 23 | 2 | 5 | 5 | 6 | 9 | 5 | 3 | 28356 |
B.1.1.7 (Alpha) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4001 |
B.1.351 (Beta) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 40 |
P.1 (Gamma) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 |
Delta | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7765 |
B.1.617.2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1108 |
AY.* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6657 |
Omicron | 13 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 3 | 0 | 1 | 1 | 1 | 3 | 1 | 0 | 12448 |
B.1.1.529 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 31 |
BA.1* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3561 |
BA.2* | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6559 |
BA.2.75* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 |
BA.3* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 |
BA.4* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 212 |
BA.5* | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1607 |
BQ.1.1* | 11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 1 | 1 | 1 | 3 | 1 | 0 | 203 |
BF.7* | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 265 |
*Sampling dates and sequencing speed: Listed dates specify sampling dates (i.e. day of the positive diagnostic test). The time delay between sampling and availability of the sequencing data for individual samples exhibits more pronounced flucutations during periods of very low or very high incidences and is influenced by a number of additional factors, such as sample and sequencing logistics
View
Coloring
Increased values for clonality during moderate to high-incidence periods may indicate superspreading;
during low-incidence periods, the indicator is less informative
ID | Sampling Date | Ns | Pangolin | Status Runs | Processing Status | Sequence Last Update | Record Last Update |
---|---|---|---|---|---|---|---|
V6576 | 2023-03-27 | 599 | BA.2 | Finished | Processing | 2023-04-01 01:22:39 | 2023-04-01 18:32:07 |
V6572 | 2023-03-27 | 574 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6573 | 2023-03-27 | 574 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6574 | 2023-03-27 | 1685 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6575 | 2023-03-27 | 22664 | Unassigned | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6577 | 2023-03-27 | 579 | BQ.1.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6571 | 2023-03-25 | 398 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6569 | 2023-03-24 | 547 | BM.4.1.1 | Finished | Processing | 2023-04-01 01:22:39 | 2023-04-01 18:32:07 |
V6568 | 2023-03-24 | 853 | XBB | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6570 | 2023-03-24 | 1178 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6562 | 2023-03-23 | 21243 | Unassigned | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6563 | 2023-03-23 | 177 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6564 | 2023-03-23 | 574 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6565 | 2023-03-23 | 1366 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6566 | 2023-03-23 | 177 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6567 | 2023-03-23 | 791 | XBB.1 | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6561 | 2023-03-22 | 828 | BA.5.2.1 | Running | Processing | 2023-03-31 14:44:41 | 2023-04-01 01:17:50 |
V6560 | 2023-03-21 | 1288 | XBB | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6558 | 2023-03-20 | 29902 | Unassigned | Finished | Processing | 2023-03-31 14:44:41 | 2023-04-01 18:32:07 |
V6559 | 2023-03-20 | None | None | None | None | None | None |
V6557 | 2023-03-17 | 11615 | Unassigned | Finished | Processing | 2023-04-01 01:22:39 | 2023-04-01 18:32:07 |
V6548 | 2023-03-14 | 847 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6550 | 2023-03-14 | 1912 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6551 | 2023-03-14 | 1579 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6552 | 2023-03-14 | 7586 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6555 | 2023-03-14 | 1156 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6556 | 2023-03-14 | 847 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6553 | 2023-03-14 | 574 | BM.4.1.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6549 | 2023-03-14 | None | None | None | None | None | None |
V6554 | 2023-03-14 | None | None | None | None | None | None |
V6525 | 2023-03-13 | 574 | BM.4.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6532 | 2023-03-13 | 847 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6534 | 2023-03-13 | 935 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6535 | 2023-03-13 | 15066 | Unassigned | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6536 | 2023-03-13 | 1794 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6538 | 2023-03-13 | 2180 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6539 | 2023-03-13 | 1243 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6540 | 2023-03-13 | 1588 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6541 | 2023-03-13 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6543 | 2023-03-13 | 1078 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6544 | 2023-03-13 | 2066 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6545 | 2023-03-13 | 1461 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6546 | 2023-03-13 | 1178 | BQ.1.2 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6547 | 2023-03-13 | 839 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6526 | 2023-03-13 | 868 | BQ.1.2 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6527 | 2023-03-13 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6528 | 2023-03-13 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6529 | 2023-03-13 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6530 | 2023-03-13 | 576 | BQ.1.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6531 | 2023-03-13 | 847 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6533 | 2023-03-13 | 29902 | Unassigned | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6537 | 2023-03-13 | 847 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6542 | 2023-03-13 | 1616 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6522 | 2023-03-11 | 1496 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6524 | 2023-03-11 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6523 | 2023-03-11 | None | None | None | None | None | None |
V6516 | 2023-03-10 | 20744 | Unassigned | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6517 | 2023-03-10 | 2277 | XBB | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6519 | 2023-03-10 | 26043 | Unassigned | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6521 | 2023-03-10 | 1363 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6520 | 2023-03-10 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6518 | 2023-03-10 | None | None | None | None | None | None |
V6510 | 2023-03-09 | 896 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6512 | 2023-03-09 | 574 | BQ.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6514 | 2023-03-09 | 2263 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6515 | 2023-03-09 | 882 | BM.4.1.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6513 | 2023-03-09 | 28877 | Unassigned | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6511 | 2023-03-09 | None | None | None | None | None | None |
V6509 | 2023-03-08 | 1482 | XBB.1 | Finished | Processing | 2023-03-30 20:35:38 | 2023-04-01 18:32:07 |
V6501 | 2023-03-08 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6503 | 2023-03-08 | 575 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6506 | 2023-03-08 | 1351 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6508 | 2023-03-08 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6507 | 2023-03-08 | 29902 | Unassigned | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |
V6502 | 2023-03-08 | None | None | None | None | None | None |
V6504 | 2023-03-08 | None | None | None | None | None | None |
V6505 | 2023-03-08 | None | None | None | None | None | None |
V6492 | 2023-03-07 | 177 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6493 | 2023-03-07 | 177 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6494 | 2023-03-07 | 21420 | Unassigned | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6495 | 2023-03-07 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6496 | 2023-03-07 | 29370 | Unassigned | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6497 | 2023-03-07 | 855 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6498 | 2023-03-07 | 574 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6499 | 2023-03-07 | 25357 | Unassigned | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6500 | 2023-03-07 | 1113 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6485 | 2023-03-06 | 574 | BM.4.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6486 | 2023-03-06 | 1161 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6487 | 2023-03-06 | 1078 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6488 | 2023-03-06 | 1582 | BQ.1.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6489 | 2023-03-06 | 882 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6490 | 2023-03-06 | None | None | None | None | None | None |
V6491 | 2023-03-06 | None | None | None | None | None | None |
V6482 | 2023-03-04 | 883 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6483 | 2023-03-04 | 574 | XBB.1 | Finished | Processing | 2023-03-30 20:35:37 | 2023-04-01 18:32:07 |
V6484 | 2023-03-04 | 574 | XBB.1 | Finished | Processing | 2023-03-30 11:22:09 | 2023-04-01 18:32:07 |